Generating up-to-date reference libraries

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Reference libraries can easily be made as follows:

1. Navigate to the scripts folder by entering cd /genomics/home/vol-genomics/genome_tools/reference_libraries/scripts.
2. Run the appropriate script using the command in the table below.
3. Check that the following message appears: Reference library complete.

Reference libraries are automatically saved here:

/genomics/home/vol-genomics/genome_tools/reference_libraries

The newly generated libraries are saved with the current date.

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The commands are:

Reference Library	Command
maxOne	python3 maxOne_phylogeny.py
maxThree	python3 maxThree_taxonomy.py
kraken2	./kraken2_db_1Mb.sh

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