Frequently asked questions
Which reference libraries are required for which processes?
| Process | Parameter (specified in nextflow.config) |
File format |
|---|---|---|
kraken2_QC |
kdbpath |
hash.k2d, opts.k2d, taxo.k2d |
kraken2 |
kdb_minikraken_path |
hash.k2d, opts.k2d, taxo.k2d |
kraken2_miniKraken |
kdb_reads_path |
hash.k2d, opts.k2d, taxo.k2d |
fastANI |
fastanidbpath and fastanireflistpath |
.fna and the index lists |
lsBSR_NEW |
lsbsrrefgenomefasta |
.fasta |