Running Tool 2

In order to run Tool 2 you need to enter two commands in the Terminal window. The Terminal is the black window within the right side of the MobaXterm window. First enter this command:

cd ~/genome_tools/Tool_2

Then enter this command. Replace xxx with your chosen database:

nextflow run tool_2.nf --customSeq 'xxx'

If you do not include –-customSeq 'xxx' Tool 2 will use the default test sequences.