Quick start commands
Set up a stable connection:
tmux new -s <name>
To run Tool 4:
nextflow run tool_4.nf
Options
| Term | Description | Default |
|---|---|---|
--identity 'ppp' |
minimum DNA %identity | 90 |
--eValue 'qqq' |
minimum DNA eValue | 1e-8 |
--query 'mmm' |
location of query genomes | $baseDir/input_tool4/* |
--backgroundGenomesDir 'nnn' |
location of background genomes | ../reference_libraries/tool4_fasta_YYYY-MM-DD |
Example
nextflow run tool_4.nf –-identity '96' --eValue '1e-15'
Tip
To view the Quick start instructions from the command line use:
nextflow run tool_4.nf --help